Computational Microbiology Laboratory

Ab Initio Motif Identification Environment

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Step 1: select a DNA sequence from the list:




Or, upload a DNA sequence in GenBank format (example):




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Step 2: specify the following values:

  • The number of frequent words for clustering: .

  • Clustering cut off : .

  • Consensus cut off: .


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Step 3: click Continue to advance to the next stage:

 

Warning: please click Continue button just ONCE. This usually takes no more than a few minutes but the time required can vary significantly if many frequent motifs are found in the sequence. Please be patient and do not close this window. The results will appear in this window.

 

CMBL is part of the Department of Microbiology and the Institute of Bioinformatics at the University of Georgia.

Computational Microbiology laboratory, Department of Microbiology, 550 Biological Sciences, Athens, GA 30602-2605